Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MAX

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Ishikawa
cell line
Ishikawa
cell type
Endometrial Adenocarcinoma
chip antibody
MAX (Santa Cruz sc-8011)
treatment
10 nM 17beta-estradiol
time
1 hour

Sequenced DNA Library

library_name
GSM7093717
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1% formaldehyde for 10 minutes at room temperature and then treated with 125 mM Glycine for 5 minutes to stop crosslinking. Crosslinked cells were then washed with cold PBS and scraped to harvest. ChIP and library construction was performed as described in Reddy et al, Genome Research, 2009.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
24683758
Reads aligned (%)
94.1
Duplicates removed (%)
16.7
Number of peaks
6096 (qval < 1E-05)

hg19

Number of total reads
24683758
Reads aligned (%)
93.6
Duplicates removed (%)
16.9
Number of peaks
5931 (qval < 1E-05)

Base call quality data from DBCLS SRA